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For Academics


This is a way to convert multiple pdf files in a folder into pngs.

VCF to Lep-MAP

The following steps take a .vcf file with a full sib pedigree and turn it into a .linkage file for Lep-MAP.

Density plot

A density plot can be used to compare the distribution of different variables.

Installing packages

Sometimes a package is needed that is not part of the R installation. It is easy to install it, and all its dependencies.


To find out the version of all R packages used, which is useful to refer to in publications

Save a plot

It is useful to save R graphics with code, so the file creation and naming can be automated.

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Sex chromosome twitter bot

Mimulus twitter bot

Silene twitter bot

I setup the sexChr_papers twitter bot following Rob Lanfear's instructions.

I am interested in papers on sex chromosome evolution, and thus remove medical search terms. The pubmed search is sex chromosome NOT aneuploidy NOT patient? NOT chronic NOT acute NOT clinical NOT prenatal NOT diagnostic NOT congenital NOT infant? NOT syndrome NOT trisom* NOT sperm.

Casey Bergman is gathering literature Twitter bots here.